Publications

Nahuel Escobedo, Tadeo Saldaño, Juan Mac Donagh, Luciana Rodriguez Sawicki, Nicolas Palopoli, Sebastian Fernandez Alberti, Maria Silvina Fornasari, Gustavo Parisi (2024). Revealing Missing Protein–Ligand Interactions Using AlphaFold Predictions. Journal of Molecular Biology.
Cite DOI URL
Manjeet Kumar, Sushama Michael, Jesús Alvarado-Valverde, András Zeke, Tamas Lazar, Juliana Glavina, Eszter Nagy-Kanta, Juan Mac Donagh, Zsofia E Kalman, Stefano Pascarelli, Nicolas Palopoli, László Dobson, Carmen Florencia Suarez, Kim Van Roey, Izabella Krystkowiak, Juan Esteban Griffin, Anurag Nagpal, Rajesh Bhardwaj, Francesca Diella, Bálint Mészáros, Kellie Dean, Norman E Davey, Rita Pancsa, Lucía B Chemes, Toby J Gibson (2023). ELM—the Eukaryotic Linear Motif resource—2024 update. Nucleic Acids Research.
Cite DOI URL
Agustín Ormazábal, Matías Sebastián Carletti, Tadeo Enrique Saldaño, Martín Gonzalez Buitron, Julia Marchetti, Nicolas Palopoli, Alex Bateman (2023). Expanding the repertoire of human tandem repeat RNA-binding proteins. PLOS ONE.
Cite DOI URL
Bálint Mészáros, András Hatos, Nicolas Palopoli, Federica Quaglia, Edoardo Salladini, Kim Van Roey, Haribabu Arthanari, Zsuzsanna Dosztányi, Isabella C. Felli, Patrick D. Fischer, Jeffrey C. Hoch, Cy M. Jeffries, Sonia Longhi, Emiliano Maiani, Sandra Orchard, Rita Pancsa, Elena Papaleo, Roberta Pierattelli, Damiano Piovesan, Iva Pritisanac, Luiggi Tenorio, Thibault Viennet, Peter Tompa, Wim Vranken, Silvio C. E. Tosatto, Norman E. Davey (2023). Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions. Nature Methods.
Cite DOI URL
Nahuel Escobedo, Alexander Miguel Monzon, María Silvina Fornasari, Nicolas Palopoli, Gustavo Parisi (2023). Combining Protein Conformational Diversity and Phylogenetic Information Using CoDNaS and CoDNaS‐Q. Current Protocols.
Cite DOI URL
Ana Julia Velez Rueda, Franco Leonardo Bulgarelli, Nicolás Palopoli, Gustavo Parisi (2023). CaviDB: a database of cavities and their features in the structural and conformational space of proteins. Database.
Cite DOI URL
Juliana Glavina, Nicolas Palopoli, Lucía Beatriz Chemes (2022). Evolution of SLiM-mediated hijack functions in intrinsically disordered viral proteins. Essays in Biochemistry.
Cite DOI URL
Ana Julia Velez Rueda, Guillermo Ignacio Benítez, Leandro Matías Sommese, Sebastián M. Ardanaz, Estefanía L. Borucki, Nicolas Palopoli, Luis E. Iglesias, Gustavo Parisi (2022). Structural and evolutionary analysis unveil functional adaptations in the promiscuous behavior of serum albumins. Biochimie.
Cite DOI URL
Tadeo Saldaño, Nahuel Escobedo, Julia Marchetti, Diego Javier Zea, Juan Mac Donagh, Ana Julia Velez Rueda, Eduardo Gonik, Agustina García Melani, Julieta Novomisky Nechcoff, Martín N Salas, Tomás Peters, Nicolás Demitroff, Sebastian Fernandez Alberti, Nicolas Palopoli, Maria Silvina Fornasari, Gustavo Parisi (2022). Impact of protein conformational diversity on AlphaFold predictions. Bioinformatics.
Cite DOI URL
Martín González Buitrón, Ronaldo Romario Tunque Cahui, Emilio García Ríos, Layla Hirsh, Gustavo Parisi, María Silvina Fornasari, Nicolas Palopoli (2021). CoDNaS-RNA: a database of conformational diversity in the native state of RNA. Bioinformatics.
Cite DOI URL