Nico Palopoli's website
  • Bio
  • Papers
  • Experience
  • Recent & Upcoming Talks
    • Example Talk
  • Publications
    • Revealing Missing Protein–Ligand Interactions Using AlphaFold Predictions
    • ELM—the Eukaryotic Linear Motif resource—2024 update
    • Expanding the repertoire of human tandem repeat RNA-binding proteins
    • Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions
    • Combining Protein Conformational Diversity and Phylogenetic Information Using CoDNaS and CoDNaS‐Q
    • CaviDB: a database of cavities and their features in the structural and conformational space of proteins
    • Evolution of SLiM-mediated hijack functions in intrinsically disordered viral proteins
    • Structural and evolutionary analysis unveil functional adaptations in the promiscuous behavior of serum albumins
    • Impact of protein conformational diversity on AlphaFold predictions
    • CoDNaS-RNA: a database of conformational diversity in the native state of RNA
    • DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
    • Critical assessment of protein intrinsic disorder prediction
    • Intrinsically Disordered Protein Ensembles Shape Evolutionary Rates Revealing Conformational Patterns
    • “Protein” no longer means what it used to
    • The articles.ELM resource: simplifying access to protein linear motif literature by annotation, text-mining and classification
    • DisProt: intrinsic protein disorder annotation in 2020
    • ELM—the eukaryotic linear motif resource in 2020
    • An example preprint / working paper
    • Bioinformatics calls the school: Use of smartphones to introduce Python for bioinformatics in high schools
    • Assessment of Structure Quality (RNA and Protein)
    • 2nd Argentine Symposium of Young Bioinformatics Researchers (2SAJIB) organized by the ISCB-SC RSG-Argentina
    • Starch synthesis in ostreococcus tauri: The starch-binding domains of starch synthase III-B are essential for catalytic activity
    • Second ISCB Latin American Student Council Symposium (LA-SCS) 2016
    • Addressing the Role of Conformational Diversity in Protein Structure Prediction.
    • An example journal article
    • SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks
    • Computational prediction of short linear motifs from protein sequences
    • An example conference paper
    • BeEP Server: Using evolutionary information for quality assessment of protein structure models.
    • MetaBase - The wiki-database of biological databases
    • Functional and structural characterization of the catalytic domain of the starch synthase III from Arabidopsis thaliana
    • Starch-synthase III family encodes a tandem of three starch-binding domains
  • Projects
  • Blog
    • 🎉 Easily create your own simple yet highly customizable blog
    • 🧠 Sharpen your thinking with a second brain
    • 📈 Communicate your results effectively with the best data visualizations
    • 👩🏼‍🏫 Teach academic courses
    • ✅ Manage your projects
  • Projects
    • Pandas
    • PyTorch
    • scikit-learn
  • Experience
  • Teaching
    • Learn JavaScript
    • Learn Python

Revealing Missing Protein–Ligand Interactions Using AlphaFold Predictions

Dec 1, 2024·
Nahuel Escobedo
,
Tadeo Saldaño
,
Juan Mac Donagh
,
Luciana Rodriguez Sawicki
,
Nicolas Palopoli
,
Sebastian Fernandez Alberti
,
Maria Silvina Fornasari
,
Gustavo Parisi
· 0 min read
Cite DOI URL
Type
Journal article
Publication
Journal of Molecular Biology
Last updated on Dec 1, 2024
ELM—the Eukaryotic Linear Motif resource—2024 update Nov 1, 2023 →

© 2025 Me. You are free to reuse this websie under license CC BY SA 4.0

Published with Hugo Blox Builder — the free, open source website builder that empowers creators.